If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ), 'gf_id' => 'HOM05D000603', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000603' ), 'data_identifier' => 'HOM05D000603', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000603', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '936', 'num_species' => '92' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p11820' => 'bna', 'A01p38910' => 'bna', 'A03p19490' => 'bna', 'A03p34890' => 'bna', 'A03p39090' => 'bna', 'A03p52250' => 'bna', 'A04p25740' => 'bna', 'A04p26790' => 'bna', 'A05p10520' => 'bna', 'A05p12090' => 'bna', 'A05p34420' => 'bna', 'A06p08070' => 'bna', 'A07p05440' => 'bna', 'A07p30180' => 'bna', 'A07p38730' => 'bna', 'A08p33470' => 'bna', 'Aa31LG10G10900' => 'aar', 'Aa31LG1G3290' => 'aar', 'Aa31LG2G13390' => 'aar', 'Aa31LG2G9180' => 'aar', 'Aa31LG4G2860' => 'aar', 'Aa31LG4G2930' => 'aar', 'Aa31LG5G17380' => 'aar', 'Aa31LG5G3860' => 'aar', 'Aa31LG6G2440' => 'aar', 'Aa31LG8G2220' => 'aar', 'Aa31LG9G15280' => 'aar', 'Actinidia08114' => 'ach', 'Actinidia09527' => 'ach', 'Actinidia12559' => 'ach', 'Actinidia18632' => 'ach', 'Actinidia18730' => 'ach', 'Actinidia26968' => 'ach', 'Actinidia30139' => 'ach', 'Actinidia35297' => 'ach', 'Actinidia35298' => 'ach', 'Actinidia35301' => 'ach', 'Actinidia37538' => 'ach', 'Actinidia39020' => 'ach', 'Actinidia40300' => 'ach', 'Ah.03g137240' => 'amhyb', 'Ah.04g156620' => 'amhyb', 'Ah.09g236980' => 'amhyb', 'Ah.14g088570' => 'amhyb', 'Ah.15g092730' => 'amhyb', 'Ah.15g099470' => 'amhyb', 'AL1G22520' => 'aly', 'AL1G46820' => 'aly', 'AL1G61680' => 'aly', 'AL2G32220' => 'aly', 'AL3G17920' => 'aly', 'AL3G27330' => 'aly', 'AL4G29100' => 'aly', 'AL4G31280' => 'aly', 'AL7G33840' => 'aly', 'AL8G14750' => 'aly', 'AL941U10010' => 'aly', 'AL975U10010' => 'aly', 'Aqoxy1G00352' => 'aox', 'Aqoxy1G03072' => 'aox', 'Aqoxy1G03075' => 'aox', 'Aqoxy1G03159' => 'aox', 'Aqoxy1G03175' => 'aox', 'Aqoxy1G03193' => 'aox', 'Aqoxy1G03984' => 'aox', 'Aqoxy2G00597' => 'aox', 'Aqoxy2G00682' => 'aox', 'Aqoxy2G00903' => 'aox', 'Aqoxy2G00921' => 'aox', 'Aqoxy2G02706' => 'aox', 'Aqoxy2G02877' => 'aox', 'Aqoxy3G03809' => 'aox', 'Aqoxy3G03883' => 'aox', 'Aqoxy4G00291' => 'aox', 'Aqoxy5G00172' => 'aox', 'Aqoxy5G01123' => 'aox', 'Aqoxy5G01810' => 'aox', 'Aqoxy5G02036' => 'aox', 'Aqoxy5G02040' => 'aox', 'Aqoxy6G01177' => 'aox', 'Aqoxy6G03003' => 'aox', 'Aqoxy6G03041' => 'aox', 'Aqoxy7G01566' => 'aox', 'Aqoxy7G03033' => 'aox', 'Aqoxy7G03036' => 'aox', 'Aqoxy7G04076' => 'aox', 'arahy.Tifrunner.gnm1.ann1.01LY89' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1GQ87W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3TVW9H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3X21TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5AER9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6LKI21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.97KWX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AS7UNS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2L4DE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MA816V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MDX7G2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PN9IID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZE0ACQ' => 'arhy', 'AT1G11430' => 'ath', 'AT1G32580' => 'ath', 'AT1G53260' => 'ath', 'AT1G72530' => 'ath', 'AT2G35240' => 'ath', 'AT3G06790' => 'ath', 'AT3G15000' => 'ath', 'AT4G20020' => 'ath', 'AT5G44780' => 'ath', 'ATR0561G134' => 'atr', 'ATR0602G277' => 'atr', 'ATR0681G239' => 'atr', 'ATR0736G224' => 'atr', 'ATR0804G061' => 'atr', 'ATR1136G116' => 'atr', 'Atru.chr1.50' => 'acertr', 'Atru.chr10.1187' => 'acertr', 'Atru.chr10.2081' => 'acertr', 'Atru.chr2.2125' => 'acertr', 'Atru.chr2.2211' => 'acertr', 'Atru.chr2.3116' => 'acertr', 'Atru.chr2.3127' => 'acertr', 'Atru.chr2.3459' => 'acertr', 'Atru.chr4.1978' => 'acertr', 'Atru.chr4.2913' => 'acertr', 'Atru.chr6.684' => 'acertr', 'AUR62001621' => 'cqu', 'AUR62008768' => 'cqu', 'AUR62012555' => 'cqu', 'AUR62014214' => 'cqu', 'AUR62014644' => 'cqu', 'AUR62015252' => 'cqu', 'AUR62018054' => 'cqu', 'AUR62019531' => 'cqu', 'AUR62020157' => 'cqu', 'AUR62020158' => 'cqu', 'AUR62025470' => 'cqu', 'AUR62036106' => 'cqu', 'AUR62042712' => 'cqu', 'BcaB02g09467' => 'bca', 'BcaB02g09549' => 'bca', 'BcaB02g10561' => 'bca', 'BcaB03g13256' => 'bca', 'BcaB03g15674' => 'bca', 'BcaB04g20953' => 'bca', 'BcaB06g25343' => 'bca', 'BcaB06g28688' => 'bca', 'BcaB06g28834' => 'bca', 'BcaB06g29529' => 'bca', 'BcaC01g03908' => 'bca', 'BcaC01g05735' => 'bca', 'BcaC02g07726' => 'bca', 'BcaC02g07822' => 'bca', 'BcaC02g10648' => 'bca', 'BcaC02g11430' => 'bca', 'BcaC02g11627' => 'bca', 'BcaC02g12612' => 'bca', 'BcaC03g16436' => 'bca', 'BcaC05g25021' => 'bca', 'BcaC05g30557' => 'bca', 'BcaC06g30640' => 'bca', 'BcaC06g31588' => 'bca', 'BcaC06g34509' => 'bca', 'BcaC06g36032' => 'bca', 'BcaC07g38665' => 'bca', 'BcaC08g45703' => 'bca', 'BcaC09g47920' => 'bca', 'BcaC09g48460' => 'bca', 'BcaC09g51350' => 'bca', 'BcaNung01736' => 'bca', 'BcaNung03487' => 'bca', 'BNapus_Darmor_BZH_scaffold_117p00090' => 'bna', 'BolC1t01369H' => 'bol', 'BolC1t04907H' => 'bol', 'BolC1t05586H' => 'bol', 'BolC2t10304H' => 'bol', 'BolC3t14572H' => 'bol', 'BolC3t14670H' => 'bol', 'BolC3t16517H' => 'bol', 'BolC3t17007H' => 'bol', 'BolC4t21719H' => 'bol', 'BolC4t22937H' => 'bol', 'BolC4t23135H' => 'bol', 'BolC4t27774H' => 'bol', 'BolC4t27902H' => 'bol', 'BolC5t29706H' => 'bol', 'BolC5t33902H' => 'bol', 'BolC6t38589H' => 'bol', 'BolC6t39730H' => 'bol', 'BolC7t41283H' => 'bol', 'BolC7t43305H' => 'bol', 'BolC7t45571H' => 'bol', 'BolC8t49098H' => 'bol', 'BraA01t01124Z' => 'bra', 'BraA01t03937Z' => 'bra', 'BraA01t04414Z' => 'bra', 'BraA03t11202Z' => 'bra', 'BraA03t12669Z' => 'bra', 'BraA03t13058Z' => 'bra', 'BraA03t14300Z' => 'bra', 'BraA03t15312Z' => 'bra', 'BraA04t18077Z' => 'bra', 'BraA04t18183Z' => 'bra', 'BraA05t19990Z' => 'bra', 'BraA05t20153Z' => 'bra', 'BraA05t22261Z' => 'bra', 'BraA06t24006Z' => 'bra', 'BraA06t27565Z' => 'bra', 'BraA07t28338Z' => 'bra', 'BraA07t30655Z' => 'bra', 'BraA07t31426Z' => 'bra', 'BraA08t35263Z' => 'bra', 'C01p14020' => 'bna', 'C01p49500' => 'bna', 'C03p21900' => 'bna', 'C03p22710' => 'bna', 'C03p42460' => 'bna', 'C03p47370' => 'bna', 'C03p82690' => 'bna', 'C04p12940' => 'bna', 'C04p15660' => 'bna', 'C04p26200' => 'bna', 'C04p62960' => 'bna', 'C04p64190' => 'bna', 'C05p09650' => 'bna', 'C05p52180' => 'bna', 'C06p34880' => 'bna', 'C06p46890' => 'bna', 'C07p08730' => 'bna', 'C07p27730' => 'bna', 'C07p50680' => 'bna', 'C08p14490' => 'bna', 'CAN.G1119.12' => 'can', 'CAN.G14.30' => 'can', 'CAN.G1465.14' => 'can', 'CAN.G15269.1' => 'can', 'CAN.G292.4' => 'can', 'CAN.G424.21' => 'can', 'CAN.G424.84' => 'can', 'CAN.G941.5' => 'can', 'CANSAT01G2172' => 'cansat', 'CANSAT11G2176' => 'cansat', 'CANSAT11G2586' => 'cansat', 'CANSAT11G2647' => 'cansat', 'CANSAT35G0382' => 'cansat', 'CANSAT78G1217' => 'cansat', 'CARHR011710' => 'chi', 'CARHR032020' => 'chi', 'CARHR065470' => 'chi', 'CARHR081410' => 'chi', 'CARHR089960' => 'chi', 'CARHR127440' => 'chi', 'CARHR129390' => 'chi', 'CARHR140040' => 'chi', 'CARHR178100' => 'chi', 'CARHR226810' => 'chi', 'Carub.0001s1105' => 'cru', 'Carub.0001s3097' => 'cru', 'Carub.0002s1939' => 'cru', 'Carub.0003s0634' => 'cru', 'Carub.0003s1466' => 'cru', 'Carub.0004s1506' => 'cru', 'Carub.0004s1694' => 'cru', 'Carub.0007s2111' => 'cru', 'Carub.0008s0349' => 'cru', 'Ca_00056_v3' => 'car', 'Ca_00214_v3' => 'car', 'Ca_04005_v3' => 'car', 'Ca_09843_v3' => 'car', 'Ca_12139_v3' => 'car', 'Cc01_g17990' => 'ccan', 'Cc02_g11940' => 'ccan', 'Cc02_g22830' => 'ccan', 'Cc03_g01480' => 'ccan', 'CDE03G0356' => 'cde', 'CDE04G3676' => 'cde', 'CDE04G3699' => 'cde', 'CDE05G0457' => 'cde', 'CDE05G2972' => 'cde', 'CDE06G0169' => 'cde', 'CDE08G0673' => 'cde', 'CDE11G0854' => 'cde', 'CDE11G1024' => 'cde', 'CDE12G0020' => 'cde', 'Cfa000295' => 'cfa', 'Cfa014755' => 'cfa', 'Cfa019587' => 'cfa', 'Cfa023501' => 'cfa', 'Ciclev10001357m.g' => 'ccl', 'Ciclev10003591m.g' => 'ccl', 'Ciclev10005719m.g' => 'ccl', 'Ciclev10005827m.g' => 'ccl', 'Ciclev10008185m.g' => 'ccl', 'Ciclev10009235m.g' => 'ccl', 'Ciclev10026560m.g' => 'ccl', 'CiPaw.01G180700' => 'cil', 'CiPaw.02G079400' => 'cil', 'CiPaw.06G144800' => 'cil', 'CiPaw.09G154000' => 'cil', 'CiPaw.10G113700' => 'cil', 'CiPaw.11G162300' => 'cil', 'ClCG00G004720' => 'cla', 'ClCG00G004730' => 'cla', 'ClCG05G004150' => 'cla', 'ClCG05G015010' => 'cla', 'ClCG06G004940' => 'cla', 'ClCG07G010040' => 'cla', 'ClCG11G013450' => 'cla', 'COL.COLO4_09530' => 'col', 'COL.COLO4_11761' => 'col', 'COL.COLO4_13809' => 'col', 'COL.COLO4_15933' => 'col', 'COL.COLO4_17595' => 'col', 'Cpa.g.sc131.58' => 'cpa', 'Cpa.g.sc25.126' => 'cpa', 'Cpa.g.sc44.22' => 'cpa', 'Cpa.g.sc50.153' => 'cpa', 'Cpa.g.sc58.105' => 'cpa', 'Cpa.g.sc80.128' => 'cpa', 'CsaV3_3G011870' => 'csa', 'CsaV3_3G022620' => 'csa', 'CsaV3_4G008290' => 'csa', 'CsaV3_4G008300' => 'csa', 'CsaV3_5G029970' => 'csa', 'CsaV3_5G029990' => 'csa', 'CsaV3_5G030000' => 'csa', 'CsaV3_5G030020' => 'csa', 'CsaV3_5G030030' => 'csa', 'CsaV3_6G023800' => 'csa', 'CsaV3_6G023810' => 'csa', 'CSS0002302' => 'camsi', 'CSS0006358' => 'camsi', 'CSS0008226' => 'camsi', 'CSS0008579' => 'camsi', 'CSS0021694' => 'camsi', 'CSS0026371' => 'camsi', 'CSS0027755' => 'camsi', 'CSS0029084' => 'camsi', 'CSS0031985' => 'camsi', 'CSS0045302' => 'camsi', 'DCAR_001828' => 'dca', 'DCAR_003707' => 'dca', 'DCAR_009700' => 'dca', 'DCAR_018384' => 'dca', 'DCAR_018390' => 'dca', 'DCAR_018393' => 'dca', 'DCAR_018507' => 'dca', 'DCAR_019591' => 'dca', 'DCAR_029262' => 'dca', 'Dinv01012' => 'din', 'Dinv02833' => 'din', 'Dinv14974' => 'din', 'Dinv15457' => 'din', 'Dinv16380' => 'din', 'Dinv18349' => 'din', 'Dinv18959' => 'din', 'Dinv22331' => 'din', 'Dinv24309' => 'din', 'Dinv28661' => 'din', 'Dinv34658' => 'din', 'Dinv44346' => 'din', 'Duzib052G0167' => 'dzi', 'Duzib052G0416' => 'dzi', 'Duzib151G0187' => 'dzi', 'Duzib151G0996' => 'dzi', 'Duzib170G0341' => 'dzi', 'Duzib187G1333' => 'dzi', 'Duzib192G0102' => 'dzi', 'Duzib212G0907' => 'dzi', 'Duzib213G0066' => 'dzi', 'Duzib213G0295' => 'dzi', 'Duzib213G0806' => 'dzi', 'Duzib248G0711' => 'dzi', 'ECA232G2912' => 'eca', 'ECA234G1226' => 'eca', 'ECA234G2000' => 'eca', 'ECA234G4789' => 'eca', 'ECA236G2156' => 'eca', 'ECA236G2711' => 'eca', 'ECA240G1774' => 'eca', 'EL10Ac2g04820' => 'bvu', 'EL10Ac4g08304' => 'bvu', 'EL10Ac6g14064' => 'bvu', 'EL10Ac7g16197' => 'bvu', 'EL10Ac7g17653' => 'bvu', 'EL10As6g23650' => 'bvu', 'Eucgr.B01560' => 'egr', 'Eucgr.E03613' => 'egr', 'Eucgr.F01212' => 'egr', 'Eucgr.F01213' => 'egr', 'Eucgr.F01219' => 'egr', 'Eucgr.G00555' => 'egr', 'Eucgr.H02990' => 'egr', 'Eucgr.H02992' => 'egr', 'Eucgr.L01515' => 'egr', 'FAN01G0818' => 'fan', 'FAN03G2193' => 'fan', 'FAN06G4756' => 'fan', 'FAN10G1281' => 'fan', 'FAN11G0796' => 'fan', 'FAN11G3602' => 'fan', 'FAN13G0789' => 'fan', 'FAN16G0599' => 'fan', 'FAN16G1010' => 'fan', 'FAN18G1073' => 'fan', 'FAN18G4349' => 'fan', 'FAN21G1772' => 'fan', 'FAN21G1827' => 'fan', 'FAN25G0270' => 'fan', 'FAN25G2071' => 'fan', 'FAN25G3185' => 'fan', 'FvH4_3g18600' => 'fve', 'FvH4_3g21470' => 'fve', 'FvH4_4g18760' => 'fve', 'FvH4_5g12910' => 'fve', 'FvH4_7g07460' => 'fve', 'Glyma.03G123700' => 'gma', 'Glyma.06G044500' => 'gma', 'Glyma.07G245000' => 'gma', 'Glyma.08G188700' => 'gma', 'Glyma.10G005100' => 'gma', 'Glyma.10G183800' => 'gma', 'Glyma.12G169200' => 'gma', 'Glyma.12G228400' => 'gma', 'Glyma.13G249900' => 'gma', 'Glyma.13G271400' => 'gma', 'Glyma.15G064300' => 'gma', 'Glyma.17G028800' => 'gma', 'Glyma.20G206400' => 'gma', 'Gohir.A01G057100' => 'ghi', 'Gohir.A02G041300' => 'ghi', 'Gohir.A04G023599' => 'ghi', 'Gohir.A04G039900' => 'ghi', 'Gohir.A08G020400' => 'ghi', 'Gohir.A09G058800' => 'ghi', 'Gohir.A09G236600' => 'ghi', 'Gohir.A10G054000' => 'ghi', 'Gohir.A11G281800' => 'ghi', 'Gohir.A12G027600' => 'ghi', 'Gohir.A13G209500' => 'ghi', 'Gohir.A13G212600' => 'ghi', 'Gohir.A13G212800' => 'ghi', 'Gohir.D01G043500' => 'ghi', 'Gohir.D02G047100' => 'ghi', 'Gohir.D03G119732' => 'ghi', 'Gohir.D05G342700' => 'ghi', 'Gohir.D05G363650' => 'ghi', 'Gohir.D07G044650' => 'ghi', 'Gohir.D08G031000' => 'ghi', 'Gohir.D09G237400' => 'ghi', 'Gohir.D10G056000' => 'ghi', 'Gohir.D10G056150' => 'ghi', 'Gohir.D11G294400' => 'ghi', 'Gohir.D12G027000' => 'ghi', 'Gohir.D13G213700' => 'ghi', 'Gohir.D13G213800' => 'ghi', 'Gohir.D13G213900' => 'ghi', 'Gorai.002G062600' => 'gra', 'Gorai.003G126200' => 'gra', 'Gorai.004G028600' => 'gra', 'Gorai.005G052100' => 'gra', 'Gorai.006G260400' => 'gra', 'Gorai.007G317600' => 'gra', 'Gorai.008G008300' => 'gra', 'Gorai.008G027500' => 'gra', 'Gorai.009G369000' => 'gra', 'Gorai.009G429000' => 'gra', 'Gorai.011G059700' => 'gra', 'Gorai.011G060000' => 'gra', 'Gorai.013G244000' => 'gra', 'Gorai.013G244200' => 'gra', 'GSVIVG01014223001' => 'vvi', 'GSVIVG01014547001' => 'vvi', 'GSVIVG01016740001' => 'vvi', 'GSVIVG01023346001' => 'vvi', 'GSVIVG01027872001' => 'vvi', 'GSVIVG01028387001' => 'vvi', 'GSVIVG01035101001' => 'vvi', 'HanXRQChr04g0111331' => 'han', 'HanXRQChr06g0172521' => 'han', 'HanXRQChr10g0294601' => 'han', 'HanXRQChr10g0304851' => 'han', 'HanXRQChr11g0331331' => 'han', 'HanXRQChr13g0413991' => 'han', 'HanXRQChr15g0494681' => 'han', 'HanXRQChr15g0497121' => 'han', 'HanXRQChr16g0517081' => 'han', 'Haze_01152' => 'cav', 'Haze_01805' => 'cav', 'Haze_06638' => 'cav', 'Haze_06649' => 'cav', 'Haze_09345' => 'cav', 'Hma1.2p1_0024F.1_g016190' => 'hma', 'Hma1.2p1_1108F.1_g257790' => 'hma', 'Hma1.2p1_1108F.1_g257795' => 'hma', 'Hma1.2p1_1112F.1_g258550' => 'hma', 'Hma1.2p1_1197F.1_g266230' => 'hma', 'Hma1.2p1_1928F.1_g307870' => 'hma', 'Hma1.2p1_2167F.1_g315900' => 'hma', 'Hma1.2p1_3645F.1_g337156' => 'hma', 'HPP92_005891' => 'vpl', 'HPP92_013729' => 'vpl', 'HPP92_021092' => 'vpl', 'HPP92_022383' => 'vpl', 'HPP92_023038' => 'vpl', 'Hund05472' => 'sun', 'Hund15494' => 'sun', 'Hund18835' => 'sun', 'Hund20515' => 'sun', 'Hund21308' => 'sun', 'Hund23550' => 'sun', 'Hund23558' => 'sun', 'Lalb_Chr01g0006761' => 'lal', 'Lalb_Chr01g0016661' => 'lal', 'Lalb_Chr03g0037321' => 'lal', 'Lalb_Chr06g0169261' => 'lal', 'Lalb_Chr07g0182281' => 'lal', 'Lalb_Chr15g0090171' => 'lal', 'Lalb_Chr18g0060991' => 'lal', 'Lalb_Chr20g0123621' => 'lal', 'Lalb_Chr21g0312221' => 'lal', 'Lalb_Chr21g0312231' => 'lal', 'Lalb_Chr25g0285981' => 'lal', 'Lj1A71T68' => 'lonja', 'Lj1C832T7' => 'lonja', 'Lj1g0018379' => 'lja', 'Lj2A276T60' => 'lonja', 'Lj2g0024427' => 'lja', 'Lj3g0008870' => 'lja', 'Lj3g0011854' => 'lja', 'Lj3P163T14' => 'lonja', 'Lj4g0024918' => 'lja', 'Lj5A255T81' => 'lonja', 'Lj5g0010536' => 'lja', 'Lj6A58T49' => 'lonja', 'Lj6A682G73' => 'lonja', 'Lj6g0001634' => 'lja', 'Lj6g0002786' => 'lja', 'Lj6g0015385' => 'lja', 'Lj6g0025183' => 'lja', 'Lj6g0027612' => 'lja', 'Lj9A124T27' => 'lonja', 'Lj9A128T47' => 'lonja', 'Lj9A725T26' => 'lonja', 'Lj9C302T19' => 'lonja', 'Lju359C0T2' => 'lonja', 'Lsat_1_v5_gn_3_12280' => 'lsa', 'Lsat_1_v5_gn_4_58361' => 'lsa', 'Lsat_1_v5_gn_4_94060' => 'lsa', 'Lsat_1_v5_gn_5_127341' => 'lsa', 'Lsat_1_v5_gn_6_78141' => 'lsa', 'Lsat_1_v5_gn_7_103261' => 'lsa', 'Lsat_1_v5_gn_7_24360' => 'lsa', 'Lsat_1_v5_gn_8_92140' => 'lsa', 'Manes.03G102700' => 'mes', 'Manes.10G123400' => 'mes', 'Manes.12G132200' => 'mes', 'Manes.15G010200' => 'mes', 'Manes.15G092300' => 'mes', 'Manes.16G015500' => 'mes', 'Manes.17G031000' => 'mes', 'MBI02_g37278_MAGBIO' => 'mbi', 'MBI03_g30505_MAGBIO' => 'mbi', 'MBI03_g44736_MAGBIO' => 'mbi', 'MBI06_g20959_MAGBIO' => 'mbi', 'MBI07_g22363_MAGBIO' => 'mbi', 'MBI08_g05061_MAGBIO' => 'mbi', 'MBI10_g19237_MAGBIO' => 'mbi', 'MBI13_g36732_MAGBIO' => 'mbi', 'MBI13_g38282_MAGBIO' => 'mbi', 'MBI18_g38400_MAGBIO' => 'mbi', 'MBI19_g09829_MAGBIO' => 'mbi', 'MBI19_g30014_MAGBIO' => 'mbi', 'MD03G1041100' => 'mdo', 'MD03G1215700' => 'mdo', 'MD03G1240700' => 'mdo', 'MD08G1237000' => 'mdo', 'MD11G1230300' => 'mdo', 'MD11G1260100' => 'mdo', 'MD13G1218600' => 'mdo', 'MD15G1428800' => 'mdo', 'MD16G1163100' => 'mdo', 'MD16G1223900' => 'mdo', 'Medtr1g009840' => 'mtr', 'Medtr1g041745' => 'mtr', 'Medtr1g075460' => 'mtr', 'Medtr2g006210' => 'mtr', 'Medtr2g006240' => 'mtr', 'Medtr2g011000' => 'mtr', 'Medtr2g078090' => 'mtr', 'Medtr2g078100' => 'mtr', 'Medtr4g120340' => 'mtr', 'Medtr6g043040' => 'mtr', 'MELO3C005489.2' => 'cme', 'MELO3C006399.2' => 'cme', 'MELO3C011842.2' => 'cme', 'MELO3C011844.2' => 'cme', 'MELO3C016106.2' => 'cme', 'MELO3C018163.2' => 'cme', 'MELO3C021307.2' => 'cme', 'MELO3C021308.2' => 'cme', 'MELO3C027047.2' => 'cme', 'MELO3C031813.2' => 'cme', 'MELO3C031924.2' => 'cme', 'MELO3C032551.2' => 'cme', 'Migut.B00810' => 'egut', 'Migut.D00461' => 'egut', 'Migut.H01540' => 'egut', 'Migut.H01981' => 'egut', 'Migut.I01084' => 'egut', 'Migut.M01247' => 'egut', 'Migut.N00071' => 'egut', 'MSTRG.12521' => 'ama', 'MSTRG.14223' => 'ama', 'MSTRG.15952' => 'ama', 'MSTRG.17507' => 'ama', 'MSTRG.21472' => 'ama', 'Nitab4.5_0000035g0110' => 'nta', 'Nitab4.5_0000326g0250' => 'nta', 'Nitab4.5_0000383g0290' => 'nta', 'Nitab4.5_0000914g0080' => 'nta', 'Nitab4.5_0000917g0100' => 'nta', 'Nitab4.5_0000976g0260' => 'nta', 'Nitab4.5_0001208g0010' => 'nta', 'Nitab4.5_0002215g0030' => 'nta', 'Nitab4.5_0003965g0040' => 'nta', 'Nitab4.5_0005440g0030' => 'nta', 'Nitab4.5_0006980g0070' => 'nta', 'Nitab4.5_0009037g0020' => 'nta', 'Nitab4.5_0011126g0010' => 'nta', 'Nitab4.5_0011468g0010' => 'nta', 'Nitab4.5_0012392g0030' => 'nta', 'Nitab4.5_0012549g0020' => 'nta', 'Nn1g02841' => 'nnu', 'Nn1g03762' => 'nnu', 'Nn1g04386' => 'nnu', 'Nn1g09085' => 'nnu', 'Nn1g09621' => 'nnu', 'Nn2g13159' => 'nnu', 'Nn2g15296' => 'nnu', 'Nn3g19119' => 'nnu', 'Nn3g19736' => 'nnu', 'Nn3g21557' => 'nnu', 'Nn4g25747' => 'nnu', 'Nn8g38627' => 'nnu', 'Oeu015032.1' => 'oeu', 'Oeu016142.2' => 'oeu', 'Oeu016256.1' => 'oeu', 'Oeu018294.1' => 'oeu', 'Oeu020351.1' => 'oeu', 'Oeu031986.1' => 'oeu', 'Oeu035745.1' => 'oeu', 'Oeu036261.1' => 'oeu', 'Oeu036670.1' => 'oeu', 'Oeu050810.2' => 'oeu', 'Oeu051117.2' => 'oeu', 'Oeu052059.1' => 'oeu', 'Oeu061347.1' => 'oeu', 'Os03g0581600' => 'osa', 'Os04g0601800' => 'osa', 'Os04g0602000' => 'osa', 'Os06g0116600' => 'osa', 'Os08g0139100' => 'osa', 'Os09g0132600' => 'osa', 'Os09g0509000' => 'osa', 'Os11g0216400' => 'osa', 'Peaxi162Scf00004g00110' => 'pax', 'Peaxi162Scf00013g01241' => 'pax', 'Peaxi162Scf00015g02916' => 'pax', 'Peaxi162Scf00027g00058' => 'pax', 'Peaxi162Scf00065g01123' => 'pax', 'Peaxi162Scf00152g01429' => 'pax', 'Peaxi162Scf00152g01512' => 'pax', 'Peaxi162Scf00392g00733' => 'pax', 'Peaxi162Scf00781g00011' => 'pax', 'Peaxi162Scf00931g00036' => 'pax', 'Peaxi162Scf00934g00134' => 'pax', 'PGR031G0895' => 'pgr', 'PGR042G1673' => 'pgr', 'PGR042G2219' => 'pgr', 'PGR044G2557' => 'pgr', 'PGR083G0905' => 'pgr', 'PGSC0003DMG400014699' => 'stu', 'PGSC0003DMG400015383' => 'stu', 'PGSC0003DMG400016815' => 'stu', 'PGSC0003DMG400021272' => 'stu', 'PGSC0003DMG400021708' => 'stu', 'PGSC0003DMG400022353' => 'stu', 'PGSC0003DMG400023502' => 'stu', 'Phvul.003G107700' => 'pvu', 'Phvul.003G218150' => 'pvu', 'Phvul.004G088594' => 'pvu', 'Phvul.005G067700' => 'pvu', 'Phvul.006G195100' => 'pvu', 'Phvul.006G217000' => 'pvu', 'Potri.001G393400' => 'ptr', 'Potri.003G015100' => 'ptr', 'Potri.004G218650' => 'ptr', 'Potri.004G218800' => 'ptr', 'Potri.008G169900' => 'ptr', 'Potri.010G007200' => 'ptr', 'Potri.010G068300' => 'ptr', 'Potri.011G032900' => 'ptr', 'Potri.011G112200' => 'ptr', 'Prupe.1G045300' => 'ppe', 'Prupe.1G130500' => 'ppe', 'Prupe.1G574100' => 'ppe', 'Prupe.3G039400' => 'ppe', 'Prupe.4G168200' => 'ppe', 'Prupe.4G168400' => 'ppe', 'Prupe.4G197100' => 'ppe', 'Psat0s2390g0040' => 'psa', 'Psat1g210640' => 'psa', 'Psat4g025480' => 'psa', 'Psat4g118080' => 'psa', 'Psat5g239760' => 'psa', 'Psat6g003600' => 'psa', 'Psat6g105080' => 'psa', 'Psat6g124560' => 'psa', 'Psat7g222960' => 'psa', 'PSO017G0785' => 'pso', 'PSO017G2775' => 'pso', 'PSO017G2929' => 'pso', 'PSO017G3112' => 'pso', 'PSO017G4306' => 'pso', 'PSO063G6276' => 'pso', 'PSO161G0015' => 'pso', 'PSO170G4514' => 'pso', 'PSO170G4774' => 'pso', 'PSO407G0126' => 'pso', 'PSO478G2611' => 'pso', 'PSO478G3162' => 'pso', 'PSO541G0477' => 'pso', 'PSO541G4172' => 'pso', 'PSO541G5515' => 'pso', 'PSO675G2810' => 'pso', 'PSO675G3525' => 'pso', 'PSO675G6332' => 'pso', 'PSO832G2199' => 'pso', 'PSO832G2484' => 'pso', 'QL02p099773' => 'qlo', 'QL03p073268' => 'qlo', 'QL05p077846' => 'qlo', 'QL06p010755' => 'qlo', 'QL06p020036' => 'qlo', 'QL11p056678' => 'qlo', 'QL11p056780' => 'qlo', 'RcHm_v2.0_Chr4g0423551' => 'rch', 'RcHm_v2.0_Chr5g0031431' => 'rch', 'RcHm_v2.0_Chr5g0036911' => 'rch', 'RcHm_v2.0_Chr5g0083371' => 'rch', 'RcHm_v2.0_Chr5g0083421' => 'rch', 'RcHm_v2.0_Chr5g0083491' => 'rch', 'RcHm_v2.0_Chr5g0083551' => 'rch', 'RcHm_v2.0_Chr7g0223791' => 'rch', 'Rhsim01G0204100' => 'rsi', 'Rhsim03G0007900' => 'rsi', 'Rhsim06G0205800' => 'rsi', 'Rhsim06G0205900' => 'rsi', 'Rhsim11G0127100' => 'rsi', 'Rhsim12G0210200' => 'rsi', 'Rhsim13G0038800' => 'rsi', 'Rhsim13G0098300' => 'rsi', 'Rhsim13G0163700' => 'rsi', 'RhsimUnG0255000' => 'rsi', 'Sabra01G0165800' => 'sbr', 'Sabra01G0165900' => 'sbr', 'Sabra03G0008200' => 'sbr', 'Sabra08G0129800' => 'sbr', 'Sabra10G0005800' => 'sbr', 'Sabra10G0038800' => 'sbr', 'Sabra11G0026000' => 'sbr', 'Sabra11G0099400' => 'sbr', 'Sabra16G0258100' => 'sbr', 'SalBow2G0419' => 'sbo', 'SalBow4G3137' => 'sbo', 'SalBow5G3181' => 'sbo', 'SalBow5G4105' => 'sbo', 'SalBow6G0648' => 'sbo', 'SalBow6G3825' => 'sbo', 'SalBow6G6844' => 'sbo', 'SalBow8G1523' => 'sbo', 'SalBow8G3314' => 'sbo', 'Sc03g0010440' => 'sci', 'Sc05g0008300' => 'sci', 'Sc06g0004130' => 'sci', 'Sc13g0003170' => 'sci', 'Sc16g0007480' => 'sci', 'Sc17g0002660' => 'sci', 'Sc24g0003680' => 'sci', 'Sed0002855' => 'sed', 'Sed0008665' => 'sed', 'Sed0009050' => 'sed', 'Sed0015464' => 'sed', 'Sed0016262' => 'sed', 'Sed0021798' => 'sed', 'Sed0022009' => 'sed', 'Sed0026437' => 'sed', 'SEGI_06509' => 'sgi', 'SEGI_08260' => 'sgi', 'SEGI_09147' => 'sgi', 'SEGI_09907' => 'sgi', 'SEGI_13880' => 'sgi', 'SEGI_14471' => 'sgi', 'SEGI_18439' => 'sgi', 'SEGI_19568' => 'sgi', 'SEGI_21170' => 'sgi', 'SEGI_28337' => 'sgi', 'SEGI_31570' => 'sgi', 'SGA_v2.0_scaffold114G32007' => 'sas', 'SGA_v2.0_scaffold130G34310' => 'sas', 'SGA_v2.0_scaffold130G34312' => 'sas', 'SGA_v2.0_scaffold138G35200' => 'sas', 'SGA_v2.0_scaffold18G08278' => 'sas', 'SGA_v2.0_scaffold22G09730' => 'sas', 'SGA_v2.0_scaffold22G09784' => 'sas', 'SGA_v2.0_scaffold338G49221' => 'sas', 'SGA_v2.0_scaffold64G21889' => 'sas', 'SGA_v2.0_scaffold66G22450' => 'sas', 'SGA_v2.0_scaffold70G23710' => 'sas', 'SGA_v2.0_scaffold71G23843' => 'sas', 'SGA_v2.0_scaffold91G28031' => 'sas', 'SHI00754' => 'shi', 'SHI21681' => 'shi', 'Solyc01g066060.4' => 'sly', 'Solyc02g079210.3' => 'sly', 'Solyc02g079770.3' => 'sly', 'Solyc05g054960.4' => 'sly', 'Solyc06g008220.4' => 'sly', 'Solyc10g007180.2' => 'sly', 'Solyc12g014230.2' => 'sly', 'Sopen01g027610' => 'spe', 'Sopen02g024010' => 'spe', 'Sopen02g024540' => 'spe', 'Sopen05g033420' => 'spe', 'Sopen06g003080' => 'spe', 'Sopen10g003300' => 'spe', 'Sopen12g006020' => 'spe', 'Sp1g10070' => 'spa', 'Sp2g09610' => 'spa', 'Sp3g05770' => 'spa', 'Sp3g13200' => 'spa', 'Sp3g28400' => 'spa', 'Sp4g15760' => 'spa', 'Sp4g17460' => 'spa', 'Sp5g27610' => 'spa', 'Sp7g18480' => 'spa', 'TAR362G0610' => 'tar', 'TAR365G0926' => 'tar', 'TAR365G1020' => 'tar', 'TAR376G0026' => 'tar', 'TAR624G0289' => 'tar', 'TAR627G0770' => 'tar', 'TAR627G1122' => 'tar', 'TAR628G1026' => 'tar', 'TAR629G0293' => 'tar', 'TAR629G2858' => 'tar', 'TAR633G2576' => 'tar', 'TAR636G0029' => 'tar', 'TAR636G1767' => 'tar', 'TAR636G2784' => 'tar', 'THA.LOC104806222' => 'tha', 'THA.LOC104809532' => 'tha', 'THA.LOC104810444' => 'tha', 'THA.LOC104812252' => 'tha', 'THA.LOC104812744' => 'tha', 'THA.LOC104814441' => 'tha', 'THA.LOC104815568' => 'tha', 'THA.LOC104815569' => 'tha', 'THA.LOC104818904' => 'tha', 'THA.LOC104826090' => 'tha', 'Thecc.02G090000' => 'tca', 'Thecc.04G260200' => 'tca', 'Thecc.04G290000' => 'tca', 'Thecc.06G121600' => 'tca', 'Thecc.07G058800' => 'tca', 'Thecc.07G096800' => 'tca', 'Thecc.07G106500' => 'tca', 'Thhalv10000799m.g' => 'esa', 'Thhalv10008605m.g' => 'esa', 'Thhalv10012347m.g' => 'esa', 'Thhalv10017195m.g' => 'esa', 'Thhalv10017201m.g' => 'esa', 'Thhalv10020847m.g' => 'esa', 'Thhalv10021360m.g' => 'esa', 'Thhalv10022834m.g' => 'esa', 'Thhalv10025454m.g' => 'esa', 'TPR.G10060' => 'tpr', 'TPR.G12078' => 'tpr', 'TPR.G2089' => 'tpr', 'TPR.G22769' => 'tpr', 'TPR.G25166' => 'tpr', 'TPR.G26346' => 'tpr', 'TPR.G32668' => 'tpr', 'TWI09G0433' => 'twi', 'TWI09G1582' => 'twi', 'TWI23G0959' => 'twi', 'TWI31G1089' => 'twi', 'TWI38G0354' => 'twi', 'TWI38G0356' => 'twi', 'TWI38G1620' => 'twi', 'TWI38G1936' => 'twi', 'TWI38G2410' => 'twi', 'TWI53G0218' => 'twi', 'TWI53G0475' => 'twi', 'TWI59G1394' => 'twi', 'TWI73G0767' => 'twi', 'unitig_26.g10571' => 'ugi', 'unitig_26.g9519' => 'ugi', 'unitig_52.g17547' => 'ugi', 'unitig_749.g13535' => 'ugi', 'unitig_8.g3071' => 'ugi', 'vmacro01739' => 'vma', 'vmacro02698' => 'vma', 'vmacro03745' => 'vma', 'vmacro08188' => 'vma', 'vmacro09593' => 'vma', 'vmacro11916' => 'vma', 'vmacro11917' => 'vma', 'vmacro17431' => 'vma', 'vmacro22035' => 'vma', 'vmacro22163' => 'vma', 'vmacro23237' => 'vma', 'VMungo0540G1110' => 'vmu', 'VMungo0540G1988' => 'vmu', 'VMungo0720G1361' => 'vmu', 'VMungo1080G0181' => 'vmu', 'VMungo1215G1916' => 'vmu', 'Zm00001eb168440' => 'zma', 'Zm00001eb196740' => 'zma', 'Zm00001eb269170' => 'zma', 'Zm00001eb293410' => 'zma', 'Zm00001eb378800' => 'zma', 'Zm00001eb401990' => 'zma', 'Zm00001eb416750' => 'zma', 'Zm00001eb430340' => 'zma', 'Zm00001eb431000' => 'zma' ) $gf_id = 'HOM05D000603' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000603' ) $data_identifier = 'HOM05D000603' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 37, 'aar' => (int) 11, 'ach' => (int) 13, 'amhyb' => (int) 6, 'aly' => (int) 12, 'aox' => (int) 28, 'arhy' => (int) 13, 'ath' => (int) 9, 'atr' => (int) 6, 'acertr' => (int) 11, 'cqu' => (int) 13, 'bca' => (int) 32, 'bol' => (int) 21, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 9, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 10, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 5, 'cpa' => (int) 6, 'csa' => (int) 11, 'camsi' => (int) 10, 'dca' => (int) 9, 'din' => (int) 12, 'dzi' => (int) 12, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 9, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 14, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 5, 'sun' => (int) 7, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 8, 'mes' => (int) 7, 'mbi' => (int) 12, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 12, 'egut' => (int) 7, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppe' => (int) 7, 'psa' => (int) 9, 'pso' => (int) 20, 'qlo' => (int) 7, 'rch' => (int) 8, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 8, 'sgi' => (int) 11, 'sas' => (int) 13, 'shi' => (int) 2, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 9, 'tar' => (int) 14, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 5, 'vma' => (int) 11, 'vmu' => (int) 5, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431000' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1